A curated catalogue of human genomic structural variation




Variant Details

Variant: esv17359



Internal ID11381278
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:99586678..99587397hg38UCSC Ensembl
Innerchr6:100034554..100035273hg19UCSC Ensembl
Innerchr6:100141275..100141994hg18UCSC Ensembl
Cytoband6q16.2
Allele length
AssemblyAllele length
hg38720
hg19720
hg18720
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv25932
Supporting Variantsessv69327, essv42365, essv75039, essv62834, essv50960, essv40766, essv49491, essv78214, essv54683, essv81629, essv80371, essv53176, essv39111, essv36519, essv57116, essv48430, essv35599, essv77231, essv65423, essv32539, essv67340, essv71419, essv67884, essv34204, essv60400, essv45347, essv72223, essv73987, essv56729, essv47135, essv44285, essv59185, essv42789, essv83720
SamplesNA18502, NA11995, NA18861, NA18508, NA11931, NA12004, NA19190, NA18916, NA12287, NA12156, NA12044, NA12828, NA11993, NA12489, NA12878, NA18907, NA19114, NA11894, NA15510, NA19099, NA19225, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA07037, NA18505, NA19129, NA18511, NA12776
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv17359
Frequency
Sample Size40
Observed Gain0
Observed Loss34
Observed Complex0
Frequencyn/a


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