A curated catalogue of human genomic structural variation




Variant Details

Variant: esv17099



Internal ID11034333
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:84211893..84234467hg38UCSC Ensembl
Innerchr15:84880645..84903219hg19UCSC Ensembl
Innerchr15:82671649..82694223hg18UCSC Ensembl
Cytoband15q25.2
Allele length
AssemblyAllele length
hg3822575
hg1922575
hg1822575
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv29092
Supporting Variantsessv66631, essv40775
SamplesNA12828, NA12878
Known GenesLOC388152
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv17099
Frequency
Sample Size40
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer