A curated catalogue of human genomic structural variation




Variant Details

Variant: esv16475



Internal ID11380394
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:21305629..21307891hg38UCSC Ensembl
Innerchr20:21286267..21288529hg19UCSC Ensembl
Innerchr20:21234267..21236529hg18UCSC Ensembl
Cytoband20p11.22
Allele length
AssemblyAllele length
hg382263
hg192263
hg182263
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22449
Supporting Variantsessv67755, essv77021, essv54552, essv40516, essv41571, essv64788, essv54018, essv36010, essv34756, essv47516, essv45603, essv48649, essv69150, essv56497, essv71011, essv78321, essv44500, essv66226, essv72990, essv59795, essv39538, essv43269, essv73735, essv61222, essv50365, essv82188, essv74362, essv50883
SamplesNA18502, NA18861, NA18508, NA11931, NA12004, NA18916, NA12287, NA12156, NA12044, NA12489, NA12878, NA18907, NA07045, NA19114, NA12239, NA19099, NA19225, NA06985, NA18523, NA18858, NA18909, NA18517, NA19240, NA07037, NA18505, NA19129, NA18511, NA12776
Known GenesXRN2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv16475
Frequency
Sample Size40
Observed Gain28
Observed Loss0
Observed Complex0
Frequencyn/a


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