A curated catalogue of human genomic structural variation




Variant Details

Variant: esv16071



Internal ID11379990
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:28364278..28415225hg38UCSC Ensembl
Innerchr16:28375599..28426546hg19UCSC Ensembl
Innerchr16:28283100..28334047hg18UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg3850948
hg1950948
hg1850948
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23667
Supporting Variantsessv52154, essv37038, essv77731, essv42967
SamplesNA11894, NA06985, NA18909, NA12006
Known GenesEIF3C, EIF3CL, MIR6862-1, MIR6862-2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv16071
Frequency
Sample Size40
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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