A curated catalogue of human genomic structural variation




Variant Details

Variant: esv15836



Internal ID11379755
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:122600836..122617308hg38UCSC Ensembl
Innerchr10:124360352..124376824hg19UCSC Ensembl
Innerchr10:124350342..124366814hg18UCSC Ensembl
Cytoband10q26.13
Allele length
AssemblyAllele length
hg3816473
hg1916473
hg1816473
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23096
Supporting Variantsessv82395, essv55813, essv60954, essv32749, essv69490, essv55037, essv52579, essv48074, essv79518, essv61467, essv82823, essv76512, essv78119, essv71156, essv43408, essv59449, essv66645, essv80251, essv40140, essv62978, essv57929, essv48818, essv74240, essv44363, essv34174, essv72961, essv37209, essv41756, essv50108, essv38135, essv53541, essv74576, essv68161
SamplesNA18502, NA11995, NA18861, NA18508, NA12004, NA19190, NA18916, NA12156, NA12044, NA12828, NA11993, NA12489, NA12878, NA19114, NA11894, NA12239, NA15510, NA19099, NA19257, NA19225, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA07037, NA12749, NA18505, NA12006, NA18511, NA12776
Known GenesDMBT1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv15836
Frequency
Sample Size40
Observed Gain0
Observed Loss33
Observed Complex0
Frequencyn/a


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