Variant DetailsVariant: esv15603![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg18/?name=chr1:153926378..153931106;width=800;overview=1) Internal ID | 11032837 | Landmark | | Location Information | | Cytoband | 1q22 | Allele length | Assembly | Allele length | hg38 | 4729 | hg19 | 4729 | hg18 | 4729 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv28903 | Supporting Variants | essv42979, essv58035, essv47834, essv37768, essv84023, essv41726, essv82125, essv49747, essv54979, essv66044, essv68734, essv32737, essv36121, essv45970, essv35031 | Samples | NA18502, NA18861, NA19190, NA18907, NA19114, NA19099, NA19257, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA18505, NA19129 | Known Genes | DAP3 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv15603
| Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 15 | Observed Complex | 0 | Frequency | n/a |
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