A curated catalogue of human genomic structural variation




Variant Details

Variant: esv15404



Internal ID11032638
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:88831204..88832084hg38UCSC Ensembl
Innerchr16:88897612..88898492hg19UCSC Ensembl
Innerchr16:87425113..87425993hg18UCSC Ensembl
Cytoband16q24.3
Allele length
AssemblyAllele length
hg38881
hg19881
hg18881
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22725
Supporting Variantsessv68447, essv44168, essv80271, essv50611, essv59288, essv43076, essv49055, essv73996, essv35343, essv78942, essv34166, essv59588, essv32753, essv81362, essv77196, essv54193, essv38770, essv39079, essv42109, essv63828, essv82607, essv56505, essv69553, essv71964, essv54935, essv51423, essv70396, essv61521, essv47217, essv66019
SamplesNA18502, NA11995, NA18861, NA18508, NA11931, NA19190, NA18916, NA12287, NA12156, NA12044, NA12489, NA18907, NA07045, NA19114, NA12239, NA19099, NA19257, NA19225, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA18511, NA12776
Known GenesGALNS
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv15404
Frequency
Sample Size40
Observed Gain0
Observed Loss30
Observed Complex0
Frequencyn/a


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