A curated catalogue of human genomic structural variation




Variant Details

Variant: esv15293



Internal ID11379212
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:57138689..57178281hg38UCSC Ensembl
Innerchr13:57712823..57752415hg19UCSC Ensembl
Innerchr13:56610824..56650416hg18UCSC Ensembl
Cytoband13q21.1
Allele length
AssemblyAllele length
hg3839593
hg1939593
hg1839593
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv28448
Supporting Variantsessv73798, essv64002, essv70318, essv79307, essv65979, essv48343, essv39667, essv36808, essv59016, essv34670, essv56650, essv69731, essv60814, essv61943, essv42513, essv52787, essv75138, essv48032, essv38090, essv42896, essv33164, essv44554, essv54351, essv50209, essv40116, essv83597, essv80336, essv67680, essv52287, essv78514, essv57921
SamplesNA18502, NA11995, NA18861, NA18508, NA12004, NA19190, NA18916, NA12287, NA12156, NA12044, NA11993, NA12489, NA12878, NA07045, NA11894, NA12239, NA19099, NA19257, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA12006, NA12776
Known GenesPRR20A, PRR20B, PRR20C, PRR20D, PRR20E
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv15293
Frequency
Sample Size40
Observed Gain28
Observed Loss3
Observed Complex0
Frequencyn/a


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