A curated catalogue of human genomic structural variation




Variant Details

Variant: esv15107



Internal ID11379026
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:50109929..50266493hg38UCSC Ensembl
Innerchr5:49405763..49562327hg19UCSC Ensembl
Innerchr5:49441520..49598084hg18UCSC Ensembl
Cytoband5q11.1
Allele length
AssemblyAllele length
hg38156565
hg19156565
hg18156565
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv28135
Supporting Variantsessv60538, essv78377, essv35708, essv62836, essv68899, essv70382, essv61478
SamplesNA18916, NA18907, NA12239, NA15510, NA06985, NA18523, NA18858
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv15107
Frequency
Sample Size40
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer