A curated catalogue of human genomic structural variation




Variant Details

Variant: esv14852



Internal ID11032086
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:21168353..21356033hg38UCSC Ensembl
Innerchr22:21522642..21710322hg19UCSC Ensembl
Innerchr22:19852642..20040322hg18UCSC Ensembl
Cytoband22q11.21
Allele length
AssemblyAllele length
hg38187681
hg19187681
hg18187681
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv28075
Supporting Variantsessv78071, essv54308, essv67531, essv32180, essv45841, essv82293, essv80568, essv83172, essv60250, essv49365
SamplesNA11995, NA19190, NA19114, NA19099, NA06985, NA18523, NA18858, NA19147, NA18517, NA19129
Known GenesFAM230B, POM121L8P
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv14852
Frequency
Sample Size40
Observed Gain10
Observed Loss0
Observed Complex0
Frequencyn/a


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