A curated catalogue of human genomic structural variation




Variant Details

Variant: esv14773



Internal ID11378692
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:748681..749691hg38UCSC Ensembl
Innerchr5:748796..749806hg19UCSC Ensembl
Innerchr5:801796..802806hg18UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg381011
hg191011
hg181011
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv24225
Supporting Variantsessv80992, essv56051, essv40379, essv74940, essv49673, essv51056, essv67595, essv74040, essv51906, essv62185, essv39437
SamplesNA11995, NA11931, NA12004, NA12287, NA12156, NA12878, NA12239, NA18858, NA18517, NA12006, NA12776
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv14773
Frequency
Sample Size40
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


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