A curated catalogue of human genomic structural variation




Variant Details

Variant: esv14689



Internal ID11031923
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:102776974..102778269hg38UCSC Ensembl
Innerchr14:103243311..103244606hg19UCSC Ensembl
Innerchr14:102313064..102314359hg18UCSC Ensembl
Cytoband14q32.32
Allele length
AssemblyAllele length
hg381296
hg191296
hg181296
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv27166
Supporting Variantsessv64723, essv74568, essv48149
SamplesNA07037, NA12004, NA07045
Known GenesTRAF3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv14689
Frequency
Sample Size40
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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