A curated catalogue of human genomic structural variation




Variant Details

Variant: esv14612



Internal ID11031846
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:106461832..106486912hg38UCSC Ensembl
Innerchr14:106917757..106942919hg19UCSC Ensembl
Innerchr14:105988802..106013964hg18UCSC Ensembl
Cytoband14q32.33
Allele length
AssemblyAllele length
hg3825081
hg1925163
hg1825163
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv27023
Supporting Variantsessv37067, essv34937, essv36471, essv32223, essv43035, essv50333, essv68701, essv54895, essv37721, essv41371, essv54204, essv69281, essv78552, essv45475, essv60168, essv74803, essv58512, essv51814, essv65670, essv46978, essv83379
SamplesNA18502, NA18861, NA18508, NA12004, NA19190, NA12044, NA18907, NA11894, NA19099, NA19257, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA18505, NA19129, NA12006
Known GenesLINC00221
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv14612
Frequency
Sample Size40
Observed Gain21
Observed Loss0
Observed Complex0
Frequencyn/a


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