A curated catalogue of human genomic structural variation




Variant Details

Variant: esv14187



Internal ID11378106
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:90080452..90237637hg38UCSC Ensembl
Innerchr2:90119294..90276504hg19UCSC Ensembl
Innerchr2:89756599..89913809hg18UCSC Ensembl
Cytoband2p11.2
Allele length
AssemblyAllele length
hg38157186
hg19157211
hg18157211
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv21923
Supporting Variantsessv63243, essv79778, essv48736, essv67259, essv56916, essv73334, essv37497, essv32536
SamplesNA12156, NA12828, NA11993, NA11894, NA15510, NA19147, NA07037, NA12749
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv14187
Frequency
Sample Size40
Observed Gain8
Observed Loss0
Observed Complex0
Frequencyn/a


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