A curated catalogue of human genomic structural variation




Variant Details

Variant: esv13935



Internal ID11031169
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:3712347..3719446hg38UCSC Ensembl
Innerchr6:3712581..3719680hg19UCSC Ensembl
Innerchr6:3657580..3664679hg18UCSC Ensembl
Cytoband6p25.2
Allele length
AssemblyAllele length
hg387100
hg197100
hg187100
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv24329
Supporting Variantsessv33657, essv71351, essv47158, essv59824, essv81990, essv54635, essv49097, essv44146, essv71713, essv73859, essv49670, essv52063, essv64410, essv58075, essv43411, essv67225, essv35751, essv67636, essv53387, essv79195, essv41553, essv77532, essv77409, essv66025, essv80588, essv61659
SamplesNA11995, NA18861, NA18508, NA18916, NA12156, NA12828, NA12489, NA18907, NA07045, NA19114, NA12239, NA19099, NA19225, NA06985, NA18523, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA12006, NA18511
Known Genes
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv13935
Frequency
Sample Size40
Observed Gain26
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer