A curated catalogue of human genomic structural variation




Variant Details

Variant: esv13536



Internal ID11030770
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:89332647..89334954hg38UCSC Ensembl
Innerchr15:89875878..89878185hg19UCSC Ensembl
Innerchr15:87676882..87679189hg18UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg382308
hg192308
hg182308
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23656
Supporting Variantsessv76768
SamplesNA18511
Known GenesPOLG
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv13536
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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