A curated catalogue of human genomic structural variation




Variant Details

Variant: esv13371



Internal ID11030605
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:76515541..76521716hg38UCSC Ensembl
Innerchr7:76144858..76151033hg19UCSC Ensembl
Innerchr7:75982794..75988969hg18UCSC Ensembl
Cytoband7q11.23
Allele length
AssemblyAllele length
hg386176
hg196176
hg186176
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23975
Supporting Variantsessv80154, essv56563, essv42066, essv50494, essv81894, essv45701, essv48506, essv61898, essv83830, essv33760, essv75704, essv36244, essv65712, essv47907
SamplesNA18502, NA11995, NA18861, NA12414, NA19190, NA18907, NA19114, NA12239, NA18517, NA19240, NA07037, NA18505, NA19129, NA12776
Known GenesUPK3B
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv13371
Frequency
Sample Size40
Observed Gain0
Observed Loss14
Observed Complex0
Frequencyn/a


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