Variant DetailsVariant: esv13232 | Internal ID | 11377151 | | Landmark | | | Location Information | | | Cytoband | 6q26 | | Allele length | | Assembly | Allele length | | hg38 | 43854 | | hg19 | 43854 | | hg18 | 43854 |
| | Variant Type | CNV gain+loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | esv28656 | | Supporting Variants | essv41011, essv74810, essv39185, essv62770, essv56756, essv58837, essv50272, essv75685, essv71779, essv41290, essv47970, essv77336, essv64806, essv68917, essv77933, essv70975, essv32242, essv79266, essv50777, essv38798, essv52847, essv45167, essv65993, essv49229, essv57412, essv59607, essv36684, essv44792, essv52256, essv35204, essv55382, essv67300, essv61696, essv82090 | | Samples | NA18861, NA18508, NA12414, NA11931, NA12004, NA18916, NA12287, NA12828, NA11993, NA12489, NA12878, NA18907, NA07045, NA19114, NA11894, NA12239, NA15510, NA19099, NA19257, NA19225, NA06985, NA18523, NA18858, NA19108, NA19147, NA18517, NA19240, NA07037, NA12749, NA18505, NA19129, NA12006, NA18511, NA12776 | | Known Genes | LPA | | Method | Oligo aCGH | | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | | Comments | | | Reference | Conrad_et_al_2009 | | Pubmed ID | 19812545 | | Accession Number(s) | esv13232
| | Frequency | | Sample Size | 40 | | Observed Gain | 33 | | Observed Loss | 1 | | Observed Complex | 0 | | Frequency | n/a |
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