| Internal ID | 11029962 |
| Landmark | |
| Location Information | |
| Cytoband | 6p21.32 |
| Allele length | | Assembly | Allele length | | hg38 | 3642 | | hg19 | 3642 | | hg18 | 3642 |
|
| Variant Type | CNV loss |
| Copy Number | |
| Allele State | |
| Allele Origin | |
| Probe Count | |
| Validation Flag | |
| Merged Status | M |
| Merged Variants | esv22467 |
| Supporting Variants | essv71429 |
| Samples | NA18916 |
| Known Genes | HLA-DPB1 |
| Method | Oligo aCGH |
| Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. |
| Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 |
| Comments | |
| Reference | Conrad_et_al_2009 |
| Pubmed ID | 19812545 |
| Accession Number(s) | esv12728
|
| Frequency | | Sample Size | 40 | | Observed Gain | 0 | | Observed Loss | 1 | | Observed Complex | 0 | | Frequency | n/a |
|
