A curated catalogue of human genomic structural variation




Variant Details

Variant: esv11898



Internal ID11029132
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:601031..602700hg38UCSC Ensembl
Innerchr6:601031..602700hg19UCSC Ensembl
Innerchr6:546031..547700hg18UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg381670
hg191670
hg181670
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv21609
Supporting Variantsessv44926, essv35958, essv34849, essv52823, essv70618, essv42508, essv33178, essv39698, essv74680, essv61208, essv78736, essv49026, essv69789, essv72550, essv77422, essv36806, essv73824, essv58351, essv75907, essv47026, essv62785, essv52307, essv65349
SamplesNA18502, NA18861, NA18508, NA12414, NA12004, NA18916, NA12287, NA12156, NA12044, NA12489, NA18907, NA11894, NA12239, NA15510, NA19225, NA19108, NA19147, NA19240, NA07037, NA12749, NA18505, NA12006, NA18511
Known GenesEXOC2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv11898
Frequency
Sample Size40
Observed Gain0
Observed Loss23
Observed Complex0
Frequencyn/a


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