Variant DetailsVariant: esv11880 Internal ID | 11029114 | Landmark | | Location Information | | Cytoband | 1p36.32 | Allele length | Assembly | Allele length | hg38 | 1451 | hg19 | 1451 | hg18 | 1451 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv22281 | Supporting Variants | essv74973, essv44690, essv62523, essv37405, essv47309, essv34614, essv69175, essv52452, essv76497, essv40713, essv66312 | Samples | NA18502, NA18861, NA12004, NA12044, NA12489, NA12878, NA11894, NA15510, NA19240, NA12006, NA18511 | Known Genes | PRDM16 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv11880
| Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 11 | Observed Complex | 0 | Frequency | n/a |
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