A curated catalogue of human genomic structural variation




Variant Details

Variant: esv11318



Internal ID11375237
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:77149399..77159781hg38UCSC Ensembl
Innerchr7:76778716..76789098hg19UCSC Ensembl
Innerchr7:76616652..76627034hg18UCSC Ensembl
Cytoband7q11.23
Allele length
AssemblyAllele length
hg3810383
hg1910383
hg1810383
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv26954
Supporting Variantsessv36168, essv83279
SamplesNA19190, NA18907
Known GenesCCDC146
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv11318
Frequency
Sample Size40
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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