Variant DetailsVariant: esv11039 Internal ID | 11028273 | Landmark | | Location Information | | Cytoband | 3p12.3 | Allele length | Assembly | Allele length | hg38 | 8365 | hg19 | 8365 | hg18 | 8365 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv29384 | Supporting Variants | essv63938, essv66547, essv53449, essv56801, essv66155, essv58649, essv78174, essv42778 | Samples | NA18508, NA12828, NA07045, NA06985, NA18909, NA19108, NA19240, NA12776 | Known Genes | ROBO2 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv11039
| Frequency | Sample Size | 40 | Observed Gain | 3 | Observed Loss | 5 | Observed Complex | 0 | Frequency | n/a |
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