Variant DetailsVariant: esv10828Internal ID | 11028062 | Landmark | | Location Information | | Cytoband | 15q25.2 | Allele length | Assembly | Allele length | hg38 | 123182 | hg19 | 123201 | hg18 | 123201 |
| Variant Type | CNV gain | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv22027 | Supporting Variants | essv67540, essv35449, essv61060, essv82853, essv38619, essv49493, essv55985, essv79857 | Samples | NA11995, NA19190, NA18907, NA12239, NA19257, NA18858, NA18517, NA12776 | Known Genes | CPEB1, CSPG4P8, GOLGA6L20, GOLGA6L9, LOC727751, LOC80154, RPS17, RPS17L | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv10828
| Frequency | Sample Size | 40 | Observed Gain | 8 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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