A curated catalogue of human genomic structural variation




Variant Details

Variant: esv10448



Internal ID11374367
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:33055292..33072214hg38UCSC Ensembl
Innerchr6:33023069..33039991hg19UCSC Ensembl
Innerchr6:33131047..33147969hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg3816923
hg1916923
hg1816923
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22467
Supporting Variantsessv53698, essv45790, essv49644, essv83328, essv48016, essv73132, essv59398, essv35586, essv82183, essv63494, essv71179, essv34709, essv78701, essv43440, essv68468
SamplesNA18502, NA18861, NA18508, NA19190, NA18916, NA18907, NA19114, NA15510, NA19225, NA18858, NA18909, NA19108, NA18517, NA12749, NA19129
Known GenesHLA-DPA1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv10448
Frequency
Sample Size40
Observed Gain0
Observed Loss15
Observed Complex0
Frequencyn/a


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