A curated catalogue of human genomic structural variation




Variant Details

Variant: esv10422



Internal ID11374341
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:87388736..87430683hg38UCSC Ensembl
Innerchr10:89148493..89190440hg19UCSC Ensembl
Innerchr10:89138473..89180420hg18UCSC Ensembl
Cytoband10q23.2
Allele length
AssemblyAllele length
hg3841948
hg1941948
hg1841948
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv26704
Supporting Variantsessv41119, essv40784, essv66116, essv54858, essv81599, essv46009, essv62507, essv68617, essv49165, essv34927, essv82819, essv60382, essv35840, essv36573, essv49767, essv42633, essv47841, essv32279, essv56896, essv67337
SamplesNA18502, NA18861, NA19190, NA12828, NA11993, NA12878, NA18907, NA19114, NA11894, NA15510, NA19099, NA18523, NA18858, NA18909, NA19147, NA18517, NA19240, NA07037, NA18505, NA19129
Known GenesLINC00864
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv10422
Frequency
Sample Size40
Observed Gain0
Observed Loss20
Observed Complex0
Frequencyn/a


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