A curated catalogue of human genomic structural variation




Variant Details

Variant: esv10309



Internal ID11027543
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:106357531..106770597hg38UCSC Ensembl
Innerchr14:106813460..107178839hg19UCSC Ensembl
Innerchr14:105884505..106249884hg18UCSC Ensembl
Cytoband14q32.33
Allele length
AssemblyAllele length
hg38413067
hg19365380
hg18365380
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv27023
Supporting Variantsessv44821, essv63855
SamplesNA12489, NA07045
Known GenesLINC00221
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv10309
Frequency
Sample Size40
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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