A curated catalogue of human genomic structural variation




Variant Details

Variant: esv10299



Internal ID11027533
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr21:10324359..10492346hg38UCSC Ensembl
Innerchr21:11020111..11188098hg19UCSC Ensembl
Innerchr21:10041982..10209969hg18UCSC Ensembl
Cytoband21p11.1
Allele length
AssemblyAllele length
hg38167988
hg19167988
hg18167988
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv28756
Supporting Variantsessv58691, essv76652
SamplesNA19108, NA18511
Known GenesBAGE, BAGE2, BAGE3, BAGE4, BAGE5
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv10299
Frequency
Sample Size40
Observed Gain1
Observed Loss1
Observed Complex0
Frequencyn/a


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