A curated catalogue of human genomic structural variation




Variant Details

Variant: esv10126



Internal ID11027360
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:82508648..82517162hg38UCSC Ensembl
Innerchr15:83177633..83186148hg19UCSC Ensembl
Innerchr15:80974688..80983203hg18UCSC Ensembl
Cytoband15q25.2
Allele length
AssemblyAllele length
hg388515
hg198516
hg188516
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22027
Supporting Variantsessv71148
SamplesNA18916
Known GenesLOC727751, LOC80154
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv10126
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer