A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9837831



Internal ID18769769
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:19732024..19954424hg38UCSC Ensembl
Innerchr14:20200183..20422583hg19UCSC Ensembl
Innerchr14:19270023..19492423hg18UCSC Ensembl
Cytoband14q11.2
Allele length
AssemblyAllele length
hg38222401
hg19222401
hg18222401
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3584765
Supporting Variants
SamplesOA062
Known GenesOR4K1, OR4K2, OR4K5, OR4M1, OR4N2, OR4Q3
MethodSNP array
AnalysisWe applied stringent filtering criteria such that CNV had to be a minimum of 1 kb and span 5 consecutive probes, and be detected by at least 2 out of the 3 algorithms. In addition we excluded CNVs that were on the X and Y-chromosomes, or approximately 300 kb adjacent to the centromeres and telomeres.
PlatformAffymetrix Genome-Wide Human SNP Array 6.0
Comments
ReferenceMokhtar_et_al_2014
Pubmed ID24956385
Accession Number(s)essv9837831
Frequency
Sample Size34
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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