A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9835014



Internal ID18337855
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:113566873..113612131hg38UCSC Ensembl
Innerchr2:114324450..114369708hg19UCSC Ensembl
Cytoband2q13
Allele length
AssemblyAllele length
hg3845259
hg1945259
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3584024
Supporting Variants
Samples401733CG
Known GenesDDX11L2, FAM138B, RPL23AP7, WASH2P
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=12
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9835014
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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