A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9834395



Internal ID18686822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrY:18737552..18743209hg38UCSC Ensembl
InnerchrY:20899438..20905095hg19UCSC Ensembl
CytobandYq11.222
Allele length
AssemblyAllele length
hg385658
hg195658
Variant TypeCNV loss
Copy Number0
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3575101
Supporting Variants
Samples401806DL
Known GenesHSFY1, HSFY2, TTTY9A, TTTY9B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=8
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9834395
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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