A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9834171



Internal ID18691708
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:154600896..154640209hg38UCSC Ensembl
InnerchrX:153829145..153868484hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg3839314
hg1939340
Variant TypeCNV gain
Copy Number2
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3577563
Supporting Variants
Samples401926MR
Known GenesCTAG1A, CTAG1B, FAM223A, FAM223B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=24
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9834171
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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