A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9822127



Internal ID18343856
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:38954272..38993687hg38UCSC Ensembl
Innerchr22:39350277..39389692hg19UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg3839416
hg1939416
Variant TypeCNV loss
Copy Number0
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3568392
Supporting Variants
Samples401892MJ
Known GenesAPOBEC3A, APOBEC3A_B, APOBEC3B, APOBEC3B-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=8
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9822127
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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