A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9810516



Internal ID18646608
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:32027373..32840560hg38UCSC Ensembl
Innerchr16:32038694..32851881hg19UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg38813188
hg19813188
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3582157
Supporting Variants
Samples400586RD
Known GenesHERC2P4, LOC390705, TP53TG3, TP53TG3B, TP53TG3C, TP53TG3D
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=24
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9810516
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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