Variant DetailsVariant: essv9809748Internal ID | 18313958 | Landmark | | Location Information | | Cytoband | 16p13.3 | Allele length | Assembly | Allele length | hg38 | 2608 | hg19 | 2608 |
| Variant Type | CNV loss | Copy Number | 1 | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | S | Merged Variants | esv3581932 | Supporting Variants | | Samples | 401016IT | Known Genes | FAHD1, MEIOB | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | Number of probes=10 | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | essv9809748
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
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