Variant DetailsVariant: essv9808303Internal ID | 18345340 | Landmark | | Location Information | | Cytoband | 15q13.2 | Allele length | Assembly | Allele length | hg38 | 205608 | hg19 | 205608 |
| Variant Type | CNV gain | Copy Number | 3 | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | S | Merged Variants | esv3569376 | Supporting Variants | | Samples | 401932GN | Known Genes | FAN1, HERC2P10, MTMR10 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | Number of probes=156 | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | essv9808303
| Frequency | Sample Size | 873 | Observed Gain | 1 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
|
|