A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9801960



Internal ID18326055
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:99401677..99409397hg38UCSC Ensembl
Innerchr12:99795455..99803175hg19UCSC Ensembl
Cytoband12q23.1
Allele length
AssemblyAllele length
hg387721
hg197721
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3580408
Supporting Variants
Samples401369GR
Known GenesANKS1B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=34
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9801960
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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