A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9795284



Internal ID18310183
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:133420623..133563761hg38UCSC Ensembl
Innerchr10:135234127..135377265hg19UCSC Ensembl
Cytoband10q26.3
Allele length
AssemblyAllele length
hg38143139
hg19143139
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3579239
Supporting Variants
Samples400889CM
Known GenesCYP2E1, MTG1, SCART1, SPRN, SYCE1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=236
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9795284
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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