A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9791195



Internal ID18330393
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:94439449..94658575hg38UCSC Ensembl
Innerchr9:97201731..97420857hg19UCSC Ensembl
Cytoband9q22.32
Allele length
AssemblyAllele length
hg38219127
hg19219127
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3576685
Supporting Variants
Samples401494PD
Known GenesFBP1, FBP2, HIATL1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=294
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9791195
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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