A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9786963



Internal ID18342132
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:7141698..8280120hg38UCSC Ensembl
Innerchr8:6999220..8137642hg19UCSC Ensembl
Cytoband8p23.1
Allele length
AssemblyAllele length
hg381138423
hg191138423
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3576522
Supporting Variants
Samples401855RE
Known GenesDEFB103A, DEFB103B, DEFB104A, DEFB104B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, DEFB107A, DEFB107B, DEFB109P1B, DEFB4A, DEFB4B, FAM66B, FAM66E, FAM86B3P, FAM90A10P, FAM90A7P, LINC00965, MIR548I3, PRR23D1, PRR23D2, SPAG11A, SPAG11B, USP17L1P, USP17L3, USP17L4, USP17L8, ZNF705B, ZNF705G
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=58
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9786963
Frequency
Sample Size873
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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