A curated catalogue of human genomic structural variation




Variant Details

Variant: essv9785532



Internal ID18280879
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:1685551..1739480hg38UCSC Ensembl
Innerchr1:1616990..1670919hg19UCSC Ensembl
Cytoband1p36.33
Allele length
AssemblyAllele length
hg3853930
hg1953930
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3577685
Supporting Variants
Samples400070PC
Known GenesCDK11A, CDK11B, MMP23A, SLC35E2, SLC35E2B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
CommentsNumber of probes=36
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)essv9785532
Frequency
Sample Size873
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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