A curated catalogue of human genomic structural variation




Variant Details

Variant: essv84049



Internal ID11022382
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:135760462..135889216hg38UCSC Ensembl
InnerchrX:134929000..134971374hg19UCSC Ensembl
InnerchrX:134756666..134799040hg18UCSC Ensembl
CytobandXq26.3
Allele length
AssemblyAllele length
hg38128755
hg1942375
hg1842375
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11158
Supporting Variants
SamplesNA19190
Known GenesCT45A4, CT45A5, CT45A6
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv84049
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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