A curated catalogue of human genomic structural variation




Variant Details

Variant: essv82982



Internal ID11022598
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr14:104942474..104953355hg38UCSC Ensembl
Innerchr14:105408811..105419692hg19UCSC Ensembl
Innerchr14:104479856..104490737hg18UCSC Ensembl
Cytoband14q32.33
Allele length
AssemblyAllele length
hg3810882
hg1910882
hg1810882
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11215
Supporting Variants
SamplesNA19190
Known GenesAHNAK2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv82982
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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