A curated catalogue of human genomic structural variation




Variant Details

Variant: essv80788



Internal ID10982322
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:86905739..86923014hg38UCSC Ensembl
Innerchr2:87132862..87150137hg19UCSC Ensembl
Innerchr2:86986373..87003648hg18UCSC Ensembl
Cytoband2p11.2
Allele length
AssemblyAllele length
hg3817276
hg1917276
hg1817276
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv11273
Supporting Variants
SamplesNA11995
Known GenesRGPD1, RGPD2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv80788
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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