A curated catalogue of human genomic structural variation




Variant Details

Variant: essv78375



Internal ID10975340
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32444495..32811912hg38UCSC Ensembl
Innerchr6:32412272..32779689hg19UCSC Ensembl
Innerchr6:32520250..32887667hg18UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg38367418
hg19367418
hg18367418
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv18770
Supporting Variants
SamplesNA06985
Known GenesHLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv78375
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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