A curated catalogue of human genomic structural variation




Variant Details

Variant: essv74430



Internal ID10984469
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:63739013..63740490hg38UCSC Ensembl
Innerchr20:62370366..62371843hg19UCSC Ensembl
Innerchr20:61840810..61842287hg18UCSC Ensembl
Cytoband20q13.33
Allele length
AssemblyAllele length
hg381478
hg191478
hg181478
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv18165
Supporting Variants
SamplesNA12004
Known GenesLIME1, SLC2A4RG
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv74430
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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