A curated catalogue of human genomic structural variation




Variant Details

Variant: essv74361



Internal ID10983415
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:45497258..45529576hg38UCSC Ensembl
Innerchr17:43574624..43606942hg19UCSC Ensembl
Innerchr17:40930407..40962725hg18UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3832319
hg1932319
hg1832319
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv10738
Supporting Variants
SamplesNA12004
Known GenesLRRC37A4P
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv74361
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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