A curated catalogue of human genomic structural variation




Variant Details

Variant: essv73051



Internal ID11023488
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:46512658..46707178hg38UCSC Ensembl
Innerchr17:44590024..44784544hg19UCSC Ensembl
Innerchr17:41945340..42139727hg18UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg38194521
hg19194521
hg18194388
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv9865
Supporting Variants
SamplesNA19225
Known GenesARL17A, ARL17B, LRRC37A2, NSF, NSFP1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv73051
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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