A curated catalogue of human genomic structural variation




Variant Details

Variant: essv72198



Internal ID11024341
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:16539110..16615963hg38UCSC Ensembl
Innerchr3:16580617..16657470hg19UCSC Ensembl
Innerchr3:16555621..16632474hg18UCSC Ensembl
Cytoband3p24.3
Allele length
AssemblyAllele length
hg3876854
hg1976854
hg1876854
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv15514
Supporting Variants
SamplesNA19225
Known GenesDAZL, LINC00690
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv72198
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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